Eighth coding week!#
Welcome to the ninth weekly check-in. I’ll be sharing my progress for the eighth week of coding.
What did you do this week?#
Updated PR #452: Had an extra meeting with the mentors in which we fine-tuned the molecular module and optimised the code to make it more pythonic.
I was able to generate vertices and triangles for Solvent Excluded Surfaces (SES) by using a bioconda package called msms. It’s based on this paper by Michel F. Sanner, Arthur J. Olson & Jean-Claude Spehner. The vertices and triangles were then sent to surface actor to generate a surface.
SES surface generated via msms and surface actor#
Added my GSoC blogs to the FURY blogs directory. (PR #475)
Other goals will be decided in the meeting with mentors.
What is coming up next week?#
Research about recent papers having good (fast) algorithms to create the molecular surfaces.
Create tutorials to explain how to use molecular module.
Did you get stuck anywhere?#
No.
Au Revoir!